NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10097523

Scaffold Ga0214921_10097523


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10097523 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2225
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F016396Metagenome / Metatranscriptome247Y
F073544Metagenome / Metatranscriptome120Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100975231F016396GAGGMRKSERLRLLEMQVVRLEMMVELYSQSLTNLLESQGMHTPTQLDAGKWYKAKLDTLDNE
Ga0214921_100975234F077310N/AMTLDANSVIIVIVASILSGMGTALVAEIKESKKEKIRRTEREQDMLKMELKDLEIKLYKLEKDLIEWRDKYYEAVQELIEVKAELEDTLIKLNHIILHE
Ga0214921_100975235F000671GAGGMEKILCYSCNKTKNKLNVRKSILIPINLLMCETCIASKFEPRWVVILAGRQLGSDAVKEFIIKKRYCGNDIAASELLV
Ga0214921_100975236F073544AGAAGGVREYYEVIKIVFIHAERTYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTVMDEIVFEHVEESN
Ga0214921_100975237F000473N/APNKPVFYTPEMAKRIREIKKPDMSLQMDIVRYPEFLAIRLYEDNFLQYQGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
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