Scaffold Ga0214921_10096228

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10096228
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2249
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F008359	Metagenome / Metatranscriptome	334	Y
F077291	Metagenome / Metatranscriptome	117	N
F080039	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100962283	F080039	N/A	MKRKLDHNLVSEKIGYDYANKKMMIRVYDSLKYVVEDFTKKPTWTAVVKHMLTLDGMLGGQLCEVSVNGYYSTIRKNLKDIKVIKYNAHKCLVKGENWDRFFGDEDWSWFITNTNSGGYGIIVK
Ga0214921_100962285	F077291	N/A	MYNENEITLTMTKKQLKSVVQLMGIALETDCKPMNDMSNKKLENVSILYQVLKNMYNQSK
Ga0214921_100962286	F008359	N/A	MNKSKVNVKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTIGIVKNIMNEIKLK
Ga0214921_100962287	F003691	N/A	LASIKYCRIFMYWVERMTLHIVKNYNMNSRMTNEFTETAFNTNRNERPIYRNFASSKMSNSVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESATIKQIISQYPIKLGKVEKRFIAECKRELKSVLKLSNKQLEIVLG