NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10096228

Scaffold Ga0214921_10096228


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10096228 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2249
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F008359Metagenome / Metatranscriptome334Y
F077291Metagenome / Metatranscriptome117N
F080039Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100962283F080039N/AMKRKLDHNLVSEKIGYDYANKKMMIRVYDSLKYVVEDFTKKPTWTAVVKHMLTLDGMLGGQLCEVSVNGYYSTIRKNLKDIKVIKYNAHKCLVKGENWDRFFGDEDWSWFITNTNSGGYGIIVK
Ga0214921_100962285F077291N/AMYNENEITLTMTKKQLKSVVQLMGIALETDCKPMNDMSNKKLENVSILYQVLKNMYNQSK
Ga0214921_100962286F008359N/AMNKSKVNVKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTIGIVKNIMNEIKLK
Ga0214921_100962287F003691N/ALASIKYCRIFMYWVERMTLHIVKNYNMNSRMTNEFTETAFNTNRNERPIYRNFASSKMSNSVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESATIKQIISQYPIKLGKVEKRFIAECKRELKSVLKLSNKQLEIVLG

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