Scaffold Ga0214921_10080585

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10080585
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2577
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014135	Metagenome / Metatranscriptome	265	Y
F022413	Metagenome / Metatranscriptome	214	N
F043225	Metagenome / Metatranscriptome	156	Y
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100805853	F022413	AGGA	MLLAKPKLTNTLDSKQFETFAECQEYLETYTDTSMPLVEWIAIGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFA
Ga0214921_100805856	F014135	GGAG	MSNGLMLDYDIADKITLLTLQDQLKYLRKELEDFKEGKWLHPEDVANNIKIIAALELLIPYYGGTP
Ga0214921_100805857	F043225	AGGA	MNVDLINAELQTVAFMQQEEQISLTYQDFLGIINTYYDAIRYESDSYDLDAFYYGVN
Ga0214921_100805859	F100405	AGGA	MTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKAAKVKAVKTAKAPVVKAAPVKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEI