Scaffold Ga0214921_10078178

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10078178
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2639
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F020167	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100781783	F003863	GGAGG	MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPETYKQLLDEQRSFDEQEGKSWVIAGDSKLTIAVHTRANAVPDVAGRTDYESADEGDYGGEA
Ga0214921_100781784	F001477	AGGAGG	MSNIYTIHPPKSELILFYEVVEAGGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0214921_100781785	F000821	AGGAG	MNEEYLRAKVDLCLNQAEIDLQQEEIARAIKNLERANSALSRLFGLEEEENE
Ga0214921_100781787	F003212	GGAG	MKDRYLVTLEIETYDGDPKDWDWSHLLVNDKTRFIESQFKGRVLPTNEGESNDTIQDN
Ga0214921_100781789	F020167	GGAGG	METINELVNEIYEDNYSHLEFDDAMGGDCDCHVHTTLKTIVKYWHEEESK