Scaffold Ga0214921_10075993

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10075993
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2697
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F007691	Metagenome / Metatranscriptome	346	Y
F011484	Metagenome	290	Y
F018135	Metagenome	236	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1007599310	F011484	GAGG	MKELEQFLNVESEWVLERLSTGTESNDRNYYQGRLDQLAQIRRLLNLPQIMRERAI
Ga0214921_1007599311	F018135	AGGCGG	MTVERVRHSGAYVISHFVGEGAGEYLFTRTYYRYTLKQAKAQFKIALEKEGK
Ga0214921_100759934	F003212	GGAG	MKDKWLVTIEIDTYDGDPREWDWATLSTGEDEVKVIESQFKGRVLPTSEGESK
Ga0214921_100759938	F093237	GGAG	MPYKYDLRDTGTMSNQELLNALLAREVAPRTIVGTGYINARQVAIEYLQGEIEREGASNE
Ga0214921_100759939	F007691	GAGG	MDTLEQLISEIYEDNYSHLEFDENMGGEACACPIHTTLNTIVKYRDKGESNAV