Scaffold Ga0214921_10073816

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10073816
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2758
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100738163	F048121	N/A	MQEKQTYTWSVKATSGQLVLAPKVYPTLRGAKIASKRFANKTGGSVVSVSAK
Ga0214921_100738164	F082109	N/A	MWTPIEIFLLTFLLNHSPIKSERLSVKEVIQNREAQFLIESVSLRNDN
Ga0214921_100738165	F062446	GAG	MTTKHLIKITSYKAIIAFLVISLYLILSFFLMGCANVSYKTIPDSMSEDAQDYPTKYNMMDSPDGRKNPNAQINIFGATY
Ga0214921_100738168	F048101	AGGAG	MTKKMKMKKFKNIKEFLKTCSPDEQEYIYDLYNNASVEDLIDLLFEHLPADDTIQEIEEYREEMEWDDNEAEKSNKPKRKCDCDFVGCQGC