Scaffold Ga0214921_10072918

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10072918
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2783
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F055552	Metagenome	138	Y
F075748	Metagenome	118	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1007291810	F055552	GAGG	MNKEYWQHKAELCRKIGVEQLIEGDTKNGTRNLLRMVRALEEINLIEYSEDKSADDMWNSLIANGLLLAGEGESNE
Ga0214921_100729184	F093483	GAGG	MTIERLRHSGAIVVSALVEWEGIKWLESSTYYGYTIKAAKASFIDSCKRLNYTIERG
Ga0214921_100729185	F075748	N/A	MTREEIEKIVESTDNFNAYIEDISSLNGKALDLVMEVAGVDGEEWTDEECLEVIKEITDLATAYRNTHPWN
Ga0214921_100729187	F007691	GGAG	METINQLVNEIYEDNYSHIEFDDAMGGDCDCHIHTTLKTIVKYWHEGEGE