Scaffold Ga0214921_10068529

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10068529
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2916
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F037191	Metagenome / Metatranscriptome	168	Y
F055721	Metagenome / Metatranscriptome	138	Y
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1006852910	F074866	GGAG	MMMTEIKTCHNCKYYKDYDGVFDWISSRIFGYPTLQKCYHPNRWKLIDYVNGTTCPYTTCSTERSLGFCGKMGNNWEAK
Ga0214921_100685292	F037191	AGGAGG	MTVAEWIEKLKEFPQDKEVKLTDGHKYHFYEGDFDFQLFEDVDGSTCVDIGIGGFEVEE
Ga0214921_100685294	F016800	AGGA	MFDAYTDYPFEELGDTANEEAPIRKCTILTWDRNKYCDVLVYFVDGDGDLRGHINSIKQFYLYKNEARIDDGEQFGDDELKTLSWTYR
Ga0214921_100685298	F055721	GAG	MMNKEEYFKYIEENDTYPEHSHKWIVRTYIDTPYGPGTDKMFYRNFGTFETKEEAKEFIENYKVKYTTKGFITRYSIQGLCEVL