Scaffold Ga0214921_10067333

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10067333
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2959
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F044967	Metagenome	153	N
F051684	Metagenome	143	N
F085390	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1006733310	F085390	GGAG	MNDFLQALGPFAWGFAFGYFWYPLWTLGKRIVEEARLVRKEWRNPNGNRND
Ga0214921_100673335	F001957	AGGAG	MNSVDMANNLIFRARHLQEFVVTTELPDDFGFRGVIPFDMQITGSILEARVWAVDFDEAVDRLNEFLQNTD
Ga0214921_100673337	F051684	AGGA	MYAWFVKHQDVISGFVSGIALMTAADYFARGDMTYGCLNLFIAVANLLLSGKKIGQHGQS
Ga0214921_100673339	F044967	GGAGG	MEIEMIEKTKDRFDLEQEILQCWNITDDIKNYAAEGATSKEFAALAQYYERKFDRLWNTFESMVHERKM