NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10066732

Scaffold Ga0214921_10066732


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10066732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2979
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F039497Metagenome / Metatranscriptome163N
F062447Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100667322F062447AGAAGGMKHKIFWEKNSRLKGVVPSAQIINKTSTDKFPCDAVTIRMYNVNSKNPVATAYFYGKEAQGSSWNGTNYTFAETKLMVTFDKDNQGYSFNGGVKSYSLQDLKEVLDSVRETINKL
Ga0214921_100667323F024040GAGGMNVYVTGHNWFAKVDIDTKVVNKTDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKAKEEGL
Ga0214921_100667329F039497N/AMSEQDDFNVNAGNQLRQTLYKDIVRYAQESDLTGFQVIGVLESLKFDILNAMENSGKDQDEI
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