Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10064778 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3047 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014486 | Metagenome / Metatranscriptome | 262 | Y |
F024058 | Metagenome / Metatranscriptome | 207 | N |
F024954 | Metagenome / Metatranscriptome | 203 | N |
F048090 | Metagenome / Metatranscriptome | 148 | N |
F056412 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1006477810 | F056412 | N/A | MKRKTKLEILLGNIDKASADLKKSIEESQKRLDESFAKYQHKVEVAHHNSMTINEKQIEEII |
Ga0214921_100647782 | F014486 | AGGA | MNIEKLLNENLESFYPWSDNENPPLDTDKSFVQKQRELDEVFEGWRASM |
Ga0214921_100647785 | F048090 | N/A | MTNQITSLATETCEEAYVDANAFFDYINSNDVVNAMLDALSGVYDSSETTVEVV |
Ga0214921_100647787 | F024954 | AGG | MIDYKYMKNTIETLVVGKYYQVENHIAICEFFNSSSNRKCLRKVSGVGTLLAFYDEVEEVEMTPELLKECEERKNGTMNFIGSFNASSKYKGD |
Ga0214921_100647789 | F024058 | N/A | MTHRMINWNFQRKQMRENMRKNMNASEEVIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK |
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