NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10064778

Scaffold Ga0214921_10064778


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10064778 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3047
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014486Metagenome / Metatranscriptome262Y
F024058Metagenome / Metatranscriptome207N
F024954Metagenome / Metatranscriptome203N
F048090Metagenome / Metatranscriptome148N
F056412Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1006477810F056412N/AMKRKTKLEILLGNIDKASADLKKSIEESQKRLDESFAKYQHKVEVAHHNSMTINEKQIEEII
Ga0214921_100647782F014486AGGAMNIEKLLNENLESFYPWSDNENPPLDTDKSFVQKQRELDEVFEGWRASM
Ga0214921_100647785F048090N/AMTNQITSLATETCEEAYVDANAFFDYINSNDVVNAMLDALSGVYDSSETTVEVV
Ga0214921_100647787F024954AGGMIDYKYMKNTIETLVVGKYYQVENHIAICEFFNSSSNRKCLRKVSGVGTLLAFYDEVEEVEMTPELLKECEERKNGTMNFIGSFNASSKYKGD
Ga0214921_100647789F024058N/AMTHRMINWNFQRKQMRENMRKNMNASEEVIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK

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