Scaffold Ga0214921_10064778

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10064778
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3047
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014486	Metagenome / Metatranscriptome	262	Y
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F048090	Metagenome / Metatranscriptome	148	N
F056412	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1006477810	F056412	N/A	MKRKTKLEILLGNIDKASADLKKSIEESQKRLDESFAKYQHKVEVAHHNSMTINEKQIEEII
Ga0214921_100647782	F014486	AGGA	MNIEKLLNENLESFYPWSDNENPPLDTDKSFVQKQRELDEVFEGWRASM
Ga0214921_100647785	F048090	N/A	MTNQITSLATETCEEAYVDANAFFDYINSNDVVNAMLDALSGVYDSSETTVEVV
Ga0214921_100647787	F024954	AGG	MIDYKYMKNTIETLVVGKYYQVENHIAICEFFNSSSNRKCLRKVSGVGTLLAFYDEVEEVEMTPELLKECEERKNGTMNFIGSFNASSKYKGD
Ga0214921_100647789	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMNASEEVIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGIDKDKVGTINLNNAKLVKENK