Scaffold Ga0214921_10062853

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10062853
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3116
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003379	Metagenome / Metatranscriptome	490	Y
F092052	Metagenome / Metatranscriptome	107	Y
F093318	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1006285310	F092052	GAGG	MLDECKNGQCTCEQENNFFHVKVIPQNSANLSAPKVEKPFSTYEFESNAIIDKDAIGREIFWEDLGRP
Ga0214921_1006285311	F093318	N/A	MQIQYVSKYIALSEEGLVPRLECPMDQGPLLPNQDNEDKVFIYCLSCQYKKILGLKEYNDIVRAVENAG
Ga0214921_100628538	F003379	GGA	MKKRFLGLLMLIATAILSGALLAKFLNWAGQQEDFFDFDLTEDIDNEQF