Scaffold Ga0214921_10058957

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10058957
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3271
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100589571	F096610	N/A	MANRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRASDLVTK
Ga0214921_1005895712	F027756	N/A	STRMKLKDLIDRKILYLNFPINRHAIQEGKVSEISPAEKCIKINNDWYLISNIRIIELFSEKERPALGFN
Ga0214921_100589574	F049419	N/A	MKLPKLDLLDLATTYIFFGLIYGTIVTLVWNYLFEPITFIHLSILQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIQADLDKEAEEVERQYEDLDKKD
Ga0214921_100589578	F044916	N/A	MGKKKADKSRIEKGLEKEEKTFALMAKKIVDAIKDEEELRAFAKTSLEILYKDNPNLFADHAKLKLKKK