Scaffold Ga0214921_10054379

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10054379
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3470
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y
F079590	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100543791	F079590	N/A	TLDAMISSVVDNSAKYYVCLAKSEEDWSSVPAENEKKVYYLFVFDSQTLIYDSGVWNKVQTKSGGYNYVMESIGLYARINTSMSSQLWTSVSESLIGAPTKLEIL
Ga0214921_100543794	F015434	GGA	MESETNVPPYRHTPKGMNIINETTKSAKCCDTCECGQTEEEKFNKLMETQTSFEE
Ga0214921_100543795	F023275	N/A	MGILDNLEYSIADDDGMPSQKDIDAIKQILKDSHLEERLKYMEDNGI
Ga0214921_100543797	F005531	AGGAG	MTITYSLWQDYRLLSIDNTAKNADELLEVMKDLNKLGEGFSYNIMKVEVA