Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10052024 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10052024 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3584
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3584

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F039497	Metagenome / Metatranscriptome	163	N
F062447	Metagenome / Metatranscriptome	130	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1005202410	F032536	GGA	MSQKQTLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTFQKLIRGFSDSDCWNLPQSTAKFLLPRIKHLRQNYHSLANRHHLIIDDKVVPYLGQENNFEFNETLGSYTDKTTGLGISLDEKEYEYVLDEIIFAFQMIVDEETSEVGLEELYEVYPKGFDPIKDRQMFLQKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFRDLWD
Ga0214921_100520242	F039497	GAG	MSEEDNFHCHAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNVNTEGDEDEI
Ga0214921_100520246	F104483	GGAG	MNKKIIDKIDLVIEDINYIQELIDFDTSDSSEYDLDSVVNLLAEIRGRVSNQEEEVEKIDLKQL
Ga0214921_100520248	F024040	N/A	MNIYVSGHNWLAKVDLEDSIKKSDRYTEATTRAIESVLDDEERQGVNLKIIDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEQGL
Ga0214921_100520249	F062447	AGGAG	MKHKIFWEKNSRVKGIVPAEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWGGTNYTFAETKLMVTFDKDNEGYSFNGGLKSYSLQDLKEVLDSVREILNKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10052024

Overview

Ecosystem & Geography

Associated Families

Sequences