NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10051100

Scaffold Ga0214921_10051100


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10051100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3636
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F026210Metagenome / Metatranscriptome198Y
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100511001F026210GGAGMSPILGANPLDYDAKYPQTADTSVNEDAKMFVMERNTGKEVMFQIEDGTQFYGKISSVPNSEHYCVVVDRNGTPWEWYVREEAVRFVQDISVKIK
Ga0214921_100511003F071966N/AMSCLGIEFDIKGYCIKPFYLVLGALYFTILLSLLGTLYVVLYIRYTLEILLNNIDKNRKKYNRLS
Ga0214921_100511008F011914N/AMITNNQIKALSEDELAYLYYCLKTEWDSKNMGYDFDWYILKASRNDMIHKLLDKYNTNLTDENKGLIIQILNKLEQNI

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