NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10047339

Scaffold Ga0214921_10047339


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10047339 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3847
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F006220Metagenome378Y
F007310Metagenome353Y
F015472Metagenome254Y
F033432Metagenome177Y
F048994Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100473391F015472N/ANGGTRWVTDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFARCYVRVGDNVYRGFTEDNNGVIELRLDKCYRLK
Ga0214921_1004733911F007310N/AMRAVYWNNTERWFNHHHYELLIEDITGFDLKQSLCEQSVKYMAKRLKDTPYHRTFKSKYSIYSDEYNALVEKFNDQANNNGKIEVA
Ga0214921_100473392F033432N/AMDEERWHPIDSVDCIPTCKGWNAWAPLCECGSNYCTFKPSGTVEDMKLVIEVRPLAK
Ga0214921_100473397F004583AGGAGMKSTRNSDRLREILVSTRHQIVALKDIQIDLLRTDTKVANQVATQISALEEVYKHQLSLVDLAESLEPKPRGWFSGQIKSKEDRLANIMD
Ga0214921_100473398F048994N/AMIGTVKLEFGLMNLYVNDVCIVSTNTMAGIRHAVKRYNLQGYTMIAAE
Ga0214921_100473399F006220N/AMKKFKKFVEELAIASGTEMMRASQMRPTSFKDKSKYTRKTKHKNRQDKNSGDSFLQSL
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Institute for Fundamental Biomedical Research
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