Scaffold Ga0214921_10046373

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10046373
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3904
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014116	Metagenome / Metatranscriptome	265	Y
F040536	Metagenome	161	N
F055552	Metagenome	138	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100463731	F014116	AGGAGG	VADNSADIAKRIILGAVAEGMTVEAATASAGKSIKTYEYYRRTDKIFADKVDRTRLGLK
Ga0214921_1004637312	F055552	GGAGG	MPNKEYWQRKAELCQKIGIEQLMAGDIKNGTRNLKRMVRAMEELNLIKANEGEDKSAADMWASLIANGLLLAGEGESNG
Ga0214921_1004637314	F040536	AGG	MDKIGKVIPFHPVKSPLSLFYEVIEPDGETRWGGERAFDAISWLNLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEIYKVLKGEL
Ga0214921_100463739	F075748	GGAGG	MNKQEILTVIDSTANFNAYIEGMDTLNGQALGLVIDVAGVDGEEWTDEECLEAIKDIVDMTNAYRNTHSWN