Scaffold Ga0214921_10043148

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10043148
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4120
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050934	Metagenome	144	N
F065441	Metagenome / Metatranscriptome	127	Y
F088294	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100431481	F050934	N/A	MPPEHTLIIEGDITSSRSNTTRQRIDRHLRHRIITTCGDANVMMGSKHIDPALCIYIGAYLICIDNKHLTDKVPRGNGTLCRVLSMKLNENAQSYKCKNYYGKKVWTVNAADVEWVECEHVNKTSFLTQLESQIKELKCQLDLTPNDHKIERKKIKSKLDDLNNKLAKEMTDRKFKLEPEQFSPEVTVKHYQTSSKKVAFRCKMKQIPANSNDATTGHKLQGMSKDAIIVSSWPTGGLAAMFKNWEYVVLSRVRTLSGLYLVKPIDMDKSFQPSPQLASYMDKIRKFEKDMLEKRKQAISKTFL
Ga0214921_100431483	F065441	GGA	LRLFHNELKKHNNKENTVFWKKGFEILQNIQDRSTLEKHVKRARDPISITTKNEKPNDANGIQAKSMAGNSAMGDILDMNKQLK
Ga0214921_100431484	F088294	N/A	SFSHSASCFKKDCECRFLFPFMSTDYTYIHEDKGDKDQNKTSWYFLDGSINTVYPFMVLPKRPMGCQFINAHNKTISDVFNFNTNVQIGDASQVFYSTLYTSKSTQDEDSEKQIRIGRAVIKRIKRVMNDNQEGEPSFGEGLSRVLSGLNAATTRNVISATMAHLIPCNDGSRFVYSHTFSDLLVGQMEATLEGHDISVRIRSNKFENKIITWPDSLADDYIHRPIEHELDQICFYEMTRCYKKGFNAFRNIQGGVKKYKFKETHPGHKFSHLIQLRCPSIPRIALPKGKLCLLDELDLNCTNPPHHVVDKREMYAKIALLMFYPFRQLNDLKYNGSY