NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10042879

Scaffold Ga0214921_10042879


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10042879 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4139
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012446Metagenome / Metatranscriptome280N
F019614Metagenome / Metatranscriptome228N
F040616Metagenome / Metatranscriptome161N
F071981Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100428792F012446N/AMKKLQKEFTGNYDKVGMNKFVQIRKENNVAIYQRFNTDGTPRSYEVFIVKIVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCRNIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGNKIKLDMTLKSGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV
Ga0214921_100428793F019614N/AMLEVSTWWVYSIYTMNVASIASNKIQVEYSAMPGDGREFLTFKVPNGWDDVKRLTNKVLTHNNKDFTFSGWNSDRNECYFVRLVNGPSFVASIR
Ga0214921_100428795F071981N/AMKITIEFDTDSAAFDTNQYGEVDRILQQVGSYAYEYMLHPNYQLDRNNDKGHSIVDTNGNTIGKFKIKL
Ga0214921_100428796F040616N/AMIDPEDIAYEDRVSGDADSYTGNGSGEDDLADYNQNEVGDYTNE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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