Scaffold Ga0214921_10041514

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10041514
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4236
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F002455	Metagenome / Metatranscriptome	557	Y
F012669	Metagenome / Metatranscriptome	278	Y
F026559	Metagenome / Metatranscriptome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1004151410	F000962	N/A	MNIHVPEEIKIKYPQYEFRGKQREINNRIVIEAYNPVTEQTFYYSFEEDFFWIAGQIPDYKLQKV
Ga0214921_100415146	F002455	AGG	MTDNRTYYYDIYGKMEPDYESMAAYLLDESILFVGSAVDKCDKQECTGLFININDYFAPAADSEPVTYSELPKLYEMYKEKKYDGVSQFVADKRGIPNICWKDEGSDFKKRVKDSQ
Ga0214921_100415147	F026559	AGGA	MKYEVIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTIDTFQAKTFQSKKD
Ga0214921_100415148	F012669	N/A	MSEQAYINLKDAVKRPIFDVKNINRENPRFKQMVDSYQKWNQDDYFTEHRSTYENDIIECLERYDLDGFALAQYLSEYKYIEPDSELVHILEDVTFVKSSLETEMLNQWVKENFLTIPDDVVGKKVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL