NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10040007

Scaffold Ga0214921_10040007


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10040007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4351
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F010618Metagenome301N
F016812Metagenome244Y
F027179Metagenome195Y
F054036Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1004000710F002406AGGMENLRWIRAMADRLRDELSSEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDEE
Ga0214921_1004000712F027179N/AMADGLFLYEKENSYVVMDQNDNVLKEFKTATSCSRYILKTLLSRRAAERQAIEEINKSKV
Ga0214921_100400074F016812AGGMNTINPELIKEEDEATFSTNLFKLYKLDERCGKLESPNFRVLYLKDKKTQVHVSNHFNSPTCIISYYNIEDKSCVDARMISKALYNKIYVHYFEVKKNHY
Ga0214921_100400076F054036GAGGMKLDFKVTGTISVPEDAIKHYDVAGKLYALEFNDKMYMLQLCLVAESSDGEYEMIHQYDEMLLNDIIDLRYDEAEFIEG
Ga0214921_100400079F010618GAGMSIQELIAKLQEIEAKYPQYSQDTEVVLAINTENEFSEEVEVSYIDEVVHPALDTHSGYICRIVLCGEIYTAD

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