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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10040007 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4351 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002406 | Metagenome | 562 | Y |
| F010618 | Metagenome | 301 | N |
| F016812 | Metagenome | 244 | Y |
| F027179 | Metagenome | 195 | Y |
| F054036 | Metagenome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_1004000710 | F002406 | AGG | MENLRWIRAMADRLRDELSSEYDDDTKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDEE |
| Ga0214921_1004000712 | F027179 | N/A | MADGLFLYEKENSYVVMDQNDNVLKEFKTATSCSRYILKTLLSRRAAERQAIEEINKSKV |
| Ga0214921_100400074 | F016812 | AGG | MNTINPELIKEEDEATFSTNLFKLYKLDERCGKLESPNFRVLYLKDKKTQVHVSNHFNSPTCIISYYNIEDKSCVDARMISKALYNKIYVHYFEVKKNHY |
| Ga0214921_100400076 | F054036 | GAGG | MKLDFKVTGTISVPEDAIKHYDVAGKLYALEFNDKMYMLQLCLVAESSDGEYEMIHQYDEMLLNDIIDLRYDEAEFIEG |
| Ga0214921_100400079 | F010618 | GAG | MSIQELIAKLQEIEAKYPQYSQDTEVVLAINTENEFSEEVEVSYIDEVVHPALDTHSGYICRIVLCGEIYTAD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |