 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10039345 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4405 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015061 | Metagenome / Metatranscriptome | 257 | Y |
| F061533 | Metagenome | 131 | N |
| F075040 | Metagenome | 119 | Y |
| F089880 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100393452 | F015061 | N/A | MEAFTFIKSADETLNERVHAMASLLHTASMMVIKSESRKGEGFECIKYLELAFMYYQNAQFRKRFDEPEKEKDNQPLLFTP |
| Ga0214921_100393454 | F089880 | N/A | MKKKPELELFSPTQEGVIVPLSTYLRQMAEFVKTEWAGINITETHIKKAWAKVIKNEYLEDDAPDEMLEMFEKMSADLDMAEEMAEERLSGINEEPKNIEKLIDITKEEPKNQSLALVESVKDGLELSSFTQKFDIGSGMTQCVPRGEVDMKDWVAAFAFGLTLESGAQWIIGDSVVALENAGHDDVVNQLCANFKKSYPTVSGYARACRAFPSDKRDPMLPFTVYREIGNANFGEDSAKKQGELLEAAKTEKLSSTEVRNRVRSEQGKDDKPMGHRFLLLNVGNFSNSEVLRSMPQEVEEHQLLIDLSDKSWFDPAEGEWLKFLKEQ |
| Ga0214921_100393455 | F061533 | N/A | MSNQLAGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGETYGLKFFNNTQEQSIKGNVVTLSSVRGKHGMTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDRPSEEPARVTSTPKTIVTDNPEKALDEIVETHLYIDSLVRMAYLGKITDEETLRAYVSSVFIEANRKGIHYSSKVEEPKPHSRDTSCDKVSREELDPNDWASVIVPSGSQKGKKLAEIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDSPEEDADEIPY |
| Ga0214921_100393457 | F075040 | N/A | VNGKTPVHKKLMKDTPTIKKESVETAIIAPTNIQPLQREIYLRLVSAAASDGKFELGKLPNAQSVVKQGDHLKGVSELLASCYEK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |