Scaffold Ga0214921_10038482

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10038482
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4481
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F019099	Metagenome	231	Y
F023293	Metagenome	210	Y
F032573	Metagenome	179	Y
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1003848210	F032573	GGAGG	MTKAEAWRKWWSVIHKTIPAGSYDPREAFMWDAWEAAWEEANKQSQVEINHLKEQLMRANTHDGAYKAAFLAGQMAARGGSWK
Ga0214921_100384823	F000273	GAG	MTEKLEAKSQLIEKTAFAVLPILFTCVVYLMSALDKITHDVTVLNAKISLVVTSDNKQAANSGAELAREKLRQDLEKQIGENRELIHLNRERIVILEQKVK
Ga0214921_100384826	F057197	GAGG	MTDFAAWRYENLVQFAKESTERMNLLNAEIEALNADLKAAINAYRDLLRRDALGFLETSHTAEAEKTGE
Ga0214921_100384828	F019099	GAGG	LIINGRIVKDWDKSQISTAYQRPPQFQIITWDMGRVQSWLLGQKPLARTLLEKVIR
Ga0214921_100384829	F023293	AGGA	MIKYGILDDEGRVIRWVWHMPPYPHVIERIKRQRKPKLDLSNVPEALF