Scaffold Ga0214921_10035534

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10035534
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4753
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F023293	Metagenome	210	Y
F073241	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1003553411	F073241	AGGA	MNLIHVMKDDNGDFEPLDLTPVFYKGNLMCVPHWRIKNTWVAPGGQTYTTAELLALGAKVSLSLLWQRGWVTKMLGRHNPAMLSQESLTNLIKGKTNAL
Ga0214921_100355345	F019099	AGGA	MIVKGKFIKDWDKSQISTGYQRPNQFRVITWDMGRVQSWLLGKQPLSRTLLEKVIR
Ga0214921_100355347	F023293	GGAGG	MRYGILDDEGRVIRWVWHPPPYPHVVQKIKRQRKPKTDISNLPNAPF