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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023174 Open in IMG/M |
| Scaffold ID | Ga0214921_10035256 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4779 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F057380 | Metagenome / Metatranscriptome | 136 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214921_100352561 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWTQLKLTGLFDQDDYYSDNLGSEIIPIIPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDITEIYEIRNLMTDLFRRMDESAKDVNSLKTTNKLIFHNVMIVETTPIEPSLELQGFLSTDVILEVKYSRVTDRLGRFA |
| Ga0214921_100352562 | F012456 | GGAG | LDSSVALIQASSGLERLMAGSVPGVIKDSTVAQISAFLYYEASVLSKLTSNAEFKNLFKTTIFNQIEKDFGQYVDAQARTKPRSLHHVYEWNKTGNPTARLFDLYLIDTGGLSFRIGRDFKLSKSAVPSKNKKQKRRYVFANKASVMEEGMPLVIRPKSAERLVFELDGATVFMPKGTSVTVKRPGGRAATNQFALTYGRFFGGQLVNSSIKSSGFQRLFNAKIAKALDVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL |
| Ga0214921_100352564 | F057380 | N/A | MAEIYVNSNSPIRTKIYWEGELASPTGNVTAKVYDITQNPANVISSTNLLLTLTGTAVETDVGTYQIVLPFSYSAYPRKLKIVWEYVVTGSTVGTHTTYVNVVTPYISINEQIDELNFGADPSDPSYKTYADLQMAERYARKLVEDYTQQQFYLYPYTKTVYGDDSDTIILPFKLNKIYQIYSNDILLVDNLSTPKVNNWLYEPIISETGFGIRVNRVNLLDNSVYVANGLVPPTINDTYVGAFSRNTKYKIVGEFGWDLVPAQVQMATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNSAASKGTGNLYADQLLTPHVISQMVLI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |