Scaffold Ga0214921_10032356

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10032356
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5072
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003962	Metagenome / Metatranscriptome	459	Y
F011208	Metagenome	293	N
F011649	Metagenome	288	Y
F036596	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100323561	F003962	AGG	VGLNQDREQLKAAHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSFEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDDFDTDEVDDQ
Ga0214921_100323563	F011208	AGGA	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYAKVGKSQRERWDKFRRERQTEAQASKAVA
Ga0214921_100323566	F036596	AGGA	MNKTKTWKIGEECLGGIIQAKISENAYFPSSTTVKILVKEWKTGEIIHSDIFGRIHESRLNNHLHEMTTSYYASKIMDWVKENAFTHRVLVAMEGSRS
Ga0214921_100323568	F011649	AGGA	MDEISAPPSAPIEKAKNGREIFSDKIADEIVAACGSGFTLEKAGALVGVNANTIKTWASRKPEFARRVETARKKHELSLLRDIELAGAKSWQAKAWMAERIYNHAIPSARLQVSQDVTHGLSGNLAQLLAGIAGKKKAQVIDCKDVTPKTLHTIRDNSYCATDGTQTIVTTTPKILGKTRHRRMKTRKPRAESLAKYTTTPPATPPAPI