NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10032106

Scaffold Ga0214921_10032106


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10032106 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5100
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026867Metagenome196Y
F033352Metagenome / Metatranscriptome177N
F042872Metagenome157Y
F043823Metagenome155N
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1003210611F026867GAGMSLGRLNYTAMKLRQENRALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKIMPSDFDQWRLTQTGLNLPRPADRLRSAVGKARELKSTSDSRVSWQRIASNLKAEAWLHELREGSESSD
Ga0214921_1003210612F043823N/AMKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELEKQKRR
Ga0214921_1003210613F048834GGAGGVHGERTVAHWRRVALPSIKDWAVALDAYVAGDREEVVPPGWYTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKISQRGGKIGYCRRVPHYRLTAVKTGKT
Ga0214921_100321064F033352N/AMTDLMKFRLIENIEVLACRNSAERVVKALNRGEIDQAKQLARKHEIAWHLADREFQNLNQPHRNNDFCDDE
Ga0214921_100321069F042872AGGVGSNPTPSEAYGYNDLRRNANTALTTEPKKKHYQQHSLLIRGGYPAEPAYHPNPSVARMWSAQR
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Institute for Fundamental Biomedical Research
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