Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10032000 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10032000 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5112
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5112

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003663	Metagenome / Metatranscriptome	474	Y
F005741	Metagenome / Metatranscriptome	391	Y
F013892	Metagenome / Metatranscriptome	267	Y
F021481	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100320001	F013892	GGCGG	MGDRANFVFVQNNGETIVLYGHWAGYNMLANLAEAVAKAEPRWGDESYATRIAISQMVGDGWSSETGWGL
Ga0214921_1003200013	F003663	AGGTGG	MLSTASALLDATKSSVFNDDIMGLAGELHTRRNELDDETYAKYLFMYSSALASKVADSVTKVLLTEQQMSDLCATIQELDELTETILEEN
Ga0214921_100320003	F001043	N/A	MSRQDIQGDKMSDYKDGFDDGYKFAREEIMEKLREIDITDIDSWILDRLSDMIEGGNI
Ga0214921_100320004	F000311	GAG	MYFELTAPDRLSMEMAYWDAQMLGLDPEAMSPLTFNIGTGSIEKVSRIRDKYNLTESYLSDYEPTGYTGR
Ga0214921_100320005	F003422	AGG	MCYGSHKIFPEIPGQMSVGTCIILCMSNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRNTTLVSVEHATIQPTNQTEEKMDTTTIGSDAFHSPAVEYNPDLLVTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKTVSLLQSKISTVKDIILEAYAMSDDQETLQAIAEALDIELTRDIEFTATVEVSGTITLNLLEDYDLESEITDALYVDAHNGNIVIDDQEVCHVREA
Ga0214921_100320008	F005741	N/A	MKNRFRVEIYDANKQHDLTIYSEQGVDKEYLTEIVFSNLRRFQGQVKAYVFDSLKKKKTTALVIDETTVNKLNRNRIPTAIEIGLA
Ga0214921_100320009	F021481	AGGA	MSPILDTKKGRFYKKGDVFTTGKSGITGTISEIISVRPTLTKLGLQTENGLRWAMVKIGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10032000

Overview

Ecosystem & Geography

Associated Families

Sequences