Scaffold Ga0214921_10030024

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10030024
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5363
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F009885	Metagenome / Metatranscriptome	311	Y
F012455	Metagenome / Metatranscriptome	280	Y
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100300241	F009885	N/A	MTTSDWAQFILALLSIGAIVVGSIRWYIQVQIKPIGEAVEDIRSETKTNGGTSMRDEIRAIKSEQEEAKHLRKATSDKLDHMYEVLLDYVSRSK
Ga0214921_1003002412	F012455	N/A	MLKEIKNKIIRIQELRRSNAATAIPNKKKYTRKVKHKNGK
Ga0214921_100300245	F015434	GGA	MESKYPDSWNRHTPKGMNIVDETTKSTKCCDTCECDQTKEEKFNKLMETQSSFEE
Ga0214921_100300246	F023275	GAG	VLTTTAQPAINMGILDNLEYSIADNDGMPNKTVEETIQEMTEDPEYDKLMERLKYMEDNG
Ga0214921_100300247	F005531	AGGA	MTITYSLWQDYRLLSIDNTAKNADELLEVMKDLNKLGKGFSYNIMKVEVA