Scaffold Ga0214921_10029523

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10029523
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5427
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F014714	Metagenome / Metatranscriptome	260	N
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002952310	F011646	AGGAG	VSNVLELRNGALKRVIFYEVSDAQNLAIWGGESPSEALKWYRNSPLDSKIYVQEWLTDEEDAREVSPQIEITSIVLSTIANCMERWSN
Ga0214921_1002952311	F011756	GAGG	VSDPRYLEGDEFALSGGYEELVNCNECDVMFDRVEYQSDTCSECEDKRVMREKESK
Ga0214921_100295234	F014714	AGGTGG	LGIELKEPELLDYLKEFYYPDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLTEIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF
Ga0214921_100295239	F034906	AGGTGG	LSKLEKRLQSAADQAVRQRNYQRARQRAFTRLANAFPDIYRAYLEEEKEADEKMGKKWLDLDGNTSPINNGAR