Scaffold Ga0214921_10029154

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10029154
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5478
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010247	Metagenome / Metatranscriptome	306	Y
F013082	Metagenome	274	Y
F024771	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100291541	F024771	GAG	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCVNRGYLYRKLGLNAVSDSQSFAESVIPLFAKLPTLIKAFPDYFVYAPKEAHKQEQFFVELKNATWEGGKTLTKIKVRDIKRYIYFEQSFTNYHTKFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDNIEYFEVQLN
Ga0214921_1002915418	F006893	AGGA	MANLTIENISEITKKVLCNPKLYKELNFFEVPHNKICLAVIREITKLSYNEIGKAYKKSWFTIYSAVKDTNKNGLKT
Ga0214921_100291545	F010247	AGGAG	MNVQGVIKYVYDNRLGKDGQANKFPNFKFKVGDHEVVLWSAILHPAIAKGKKVSVAVQASKKNGSLFVQTNEKKQPIIQELPSDANTEAKPDTSFNPEELEKELVQVAKDFDADLTVETKKQINKDEYMFVMALAKSAIESGKINVTKEEIDLLIKDLKFLFQINFHN
Ga0214921_100291548	F013082	AGGA	MSLTKTVQQEIDRLYLASKLNSHIVANEAPYYYDLCSVEDKTITLDKFYELFPYHNPDINSEYWKQQHNRWKEIWKQDVV