Scaffold Ga0214921_10026007

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10026007
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5955
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010917	Metagenome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002600711	F006893	AGGA	MENSTIKNILEITKKVLCNPKLYKDLDFFEVPHNKVCLAVIREITKLSYNDIGKAYKKSWFTIYSAVKDTNKNGLKSFTSKVIDLVKAEVK
Ga0214921_100260075	F010917	AGAAG	MSLPNEIVFGSRLVKLEFIDETEADKKKIFGEFCPNKNQITLDKSLDNIEMSNTVLHEIFHLLHDEYKIDLPAKAEETVCSSLGNGICHILYQNQQLLEFLYKSLKKA