Scaffold Ga0214921_10025933

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10025933
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5967
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F090097	Metagenome	108	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002593316	F004110	GGA	VTELHPIVYELAPSVAYAIHRRYKHWVEKDDIAQECIAWGITRNDYITEQMSVEDPKELEHNEKRIAYQMRRAAERYVRKEKASKSGYQLMDEAYYETLMLGQLLPFVIASVIDGTVLEQAQEMIRDGQPRGSSSPAEGGNLLASLIDIKKAFLELDQKDQIALRMRHHDNATLQQIAEFLECAVSTADRRCTNSLRRLQDKLGGETPYR
Ga0214921_100259333	F040536	GGAG	MDKIGKVIPFHPVKSPLSLFYEVIEPDGETRWGGERVFDAISWLHLAPKGSRLLVSGWESEDLDAQPVGQPLDITEMYQLLKGNQ
Ga0214921_100259334	F090097	GAGG	MTIRSKRVSGKQAIHYRNYRRARDRALTRLSQAYPETYKELLELEKVDDGTSGAKWVDIDGNNSLVVVVGTGSRERGVIIESASYFAEGEGERE
Ga0214921_100259335	F041090	GAGG	VRNEPTNGSQGNIVQLSAIRRQKHIASSPYGPVSQGLTTLQRINRDQALTELLNSLESVVADLNSKSYTALDTLTIAIQGARVALCDTTTEEAGTDETT
Ga0214921_100259337	F100350	AGGA	MIYSFKCECGSTRDIEQSIHAAIEEPICTDCHQSMSRCWSSPAVTFKGPGFYSNGG