Scaffold Ga0214921_10025340

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10025340
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6065
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F055552	Metagenome	138	Y
F083706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100253401	F055552	AGGAGG	MNKEYWQAKANLCQKIGIEQLMEGDIKNGTRNLKRMVRAMEELNLIKANEGEDKSAADMWASLIASGVMLAGEGESNE
Ga0214921_100253403	F005558	GGAGG	MPTNMKDDSISWIKLAELTHATQVERFNWCSCEEQEEYPYTDCLREGESNEV
Ga0214921_100253406	F083706	AGGAG	MKNLTPRGYLVAGILIGLSIWGLWEVASHLLWVGDGWRWCNDLLTCEGEGK