Scaffold Ga0214921_10024760

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10024760
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6172
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F019324	Metagenome / Metatranscriptome	230	Y
F034573	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002476010	F034573	AGGAG	MYRISRAKRTTNEEKVAVAIGKHLSDFYLDLEKVGYYLARATPYLIYRRALEVLESAKFQEDKIEHDRLQYDQNRLP
Ga0214921_1002476014	F007112	AGGAG	MHTLHYLAVEADSKQEAFDKVVVSLQTNEDGYRIGDWSDWHVVGGGRWSTNAQKSKGILDGYNHDSTDVIGYAENKEKFQEVIKDILRFRSQSMNRNIVEIKTDKFISQMVDYASEGGRGAWNADTLMNVYSIKQAAEMLMGSWTCDSGFYDLQEYVSEFEYLNERLDKPEQAVRQYLVPVDFHF
Ga0214921_1002476018	F019324	N/A	MSMLGYERDDLDNMVLAIDSALTTVNPDDDPWLHRNLTQASDFLSGLWAEGYFD
Ga0214921_100247602	F011077	N/A	MDTNLTWDDGDIWKGWTYSPEKNRYYFDDIGNESLGALWNSEFLMQAY