Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10024049 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10024049 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6312
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6312

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011646	Metagenome / Metatranscriptome	288	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F027417	Metagenome	194	Y
F065721	Metagenome / Metatranscriptome	127	Y
F079781	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002404910	F006618	GAGG	MSKMKQHLEKQINITSLNHEETGWKRRIHFQYEGSDYQLTLYWDEFNGYDIVWRFCNGEQINRSPEWAINWDEDEHEGMSFEHYLDELTWESK
Ga0214921_1002404913	F011646	GGAG	MSNVLELRNGALKRIIFYEVSDAQNIAIWGGESPSEALKWYRNSPLDSKIWVSEWLTDDEDAREVSPQIEITSIVLSTIANCMERWSN
Ga0214921_1002404914	F018703	AGGTGG	LSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWLDISGNTRSSASRSR
Ga0214921_1002404915	F022400	AGTAGG	MVLSQIGRQRKMRRTVIESSHKITLRLVSDGKGESGNALSPFGPVRAGLTTTQRTNEEVQLTALLNCLEKKIAEANIKSLEVLNTFLRDTTHLVEPTSFGSDTTTTRV
Ga0214921_1002404917	F079781	N/A	HKMFIELKSRKTHYPELLIEEMKYQALVEAAGIRSLSPWYINATPEGIWGFDLGKLPEPAWADKWLPNTTEFANKSNRNKLVGFLKVSDGVAL
Ga0214921_100240498	F065721	AGGAG	MTKYIANENGDWWEVIEGDSLYLIDTEWENIANKMEEENSTPNDDKFERFIWRYGTPVGLDMEGVRV
Ga0214921_100240499	F027417	AGG	MNGYDYKVTFITDYLTIITQVNLMPDDDNFNNLSAEAYEQAVINAENNIVDELGRFDETLINDITVSLLLDDEEIEVGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10024049

Overview

Ecosystem & Geography

Associated Families

Sequences