Scaffold Ga0214921_10023866

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10023866
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6348
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006139	Metagenome / Metatranscriptome	380	Y
F053986	Metagenome	140	Y
F083894	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002386611	F006139	N/A	MAPQILVAVITGGFAVVVALISKVGRENKKDHGQVHQTLGRIEQKIDSHLENHR
Ga0214921_100238664	F083894	AGG	MSAFDEKQTGATPIEIVDYLRGVIDTLRAEKALLEKRYKELEASRETWQKLAAAWEWLADNKRIVPADED
Ga0214921_100238667	F053986	GGGGG	MSEGSAWNQGELSEETRNMVLESSAMANHTMAVFSLLEEIARPNHAPKKFREDHLIRGLRNMRIDFQLSGNDGYAECVTLAIEELGGQVKPD