NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10022564

Scaffold Ga0214921_10022564


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10022564 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6605
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014710Metagenome / Metatranscriptome260Y
F026209Metagenome / Metatranscriptome198Y
F036073Metagenome / Metatranscriptome170Y
F076813Metagenome / Metatranscriptome117Y
F088194Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002256411F088194N/AMMNEVAATSEETTAYALGSTIGTLLNLKRMVEQNMTDYSNNLEGMRGLHPLWSKSELMDQFDRAINKLNTITYPYKI
Ga0214921_1002256415F026209N/AMCMMNKEITYEMYDDNTGEWRQVTEPAVGGIKWEKRESLGGEKQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPARFNKFGGYSTVSAVEKLDDEHIKVEMCYHIGD
Ga0214921_100225646F014710GGAGGMNTQIEYKTIPTSFKKKGFTYTQLKREGKKAIFEQTRPGSNIHNYEVVKIGKHNGYVMGGVAIEPAETYPGSSLWGITAWTCCSLEEATKRYEGLNS
Ga0214921_100225648F076813AGGAGMKHHNHFDQNGDIRDIFAALAMQSLIDGEATPKWVANKAYQYADAMLEVREEVSHNEEIK
Ga0214921_100225649F036073AGGAGMSTADQATGYEAPYNADLHCKKIAWMVKNSPEWDYETQTLEEYLETVPEYPTDEQVKDFNHLYVAPFVPFKKEIPFKGDEVNEAS
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Institute for Fundamental Biomedical Research
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