Scaffold Ga0214921_10021992

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10021992
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6732
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002199214	F030670	N/A	VNKVIRYIKELEDEFGKPMDKWAVYEEQITAKGNWAFKDAKMVKTFPTPYHARNWMENDGKSN
Ga0214921_1002199215	F034827	N/A	MKYTITSQDKEALTEFDKIKEGEVFSFFDPESVHRGNHAIYMKIRVPNTTSVNIIDLEDGKAYDFSNKKRNTINDPDEQQGNRVYKLNAKINIVVL
Ga0214921_1002199216	F048123	GGAG	MKPRYDFTKGKLISYDGEIIEFANTKMIEKYADQVEEVMGLFDFKKGEYLVTDESLIGDFEKENIDPKKLIKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214921_1002199218	F032536	AGAAG	MSQKQTFEEMMQGFRFHKNPILNWVLGNNNYLHHTFLNAKWKVKNVLQKLTRGYSDSDCWNLPQSTAEFMLPRIKHLRQNYHSLANRHHLVIDDKIVPYVGKEDNFEFNNKLGCYTDKTTGLGISLDEKEYEYILDEIIFALQTIVDEENPDTSLEELYEVYPEGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD
Ga0214921_1002199219	F062447	AGGAG	MKHKIFWENNSRIKGIVPSEQIIKKTQTHNFPCEAVTIRMHDLNSKNPIAVAYFHGKESQHIGWGGQNHSFAETKLIVTFNKEKEEYGFNGAINSFSLQDLKEVLDSVREVLNKV
Ga0214921_1002199220	F024040	N/A	MNIYVSGHNWLAKVDLEDSITKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLRNYEENCKEQGL
Ga0214921_1002199222	F104483	GGAG	MNKKIIDKIDLVIEDINSLQELIDFDTTDSSEYDLDSVVNLLAELRGKVANQQDEVEKIDLKQL
Ga0214921_100219923	F049419	N/A	MKLPKLNILDLATTYLFFGLVYGTIVTLTWNYLFEPITFVHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLEKIDGYLKEFQDQLDKEAEEVEKQYEDLDKKD
Ga0214921_100219928	F064403	GGAG	MNNGIIRHINPRDMILENLKKSYLKEHPATLVDRILGYLNNLTDHQLCELYAEKYETNSKYIAEQFEFNF
Ga0214921_100219929	F036564	N/A	MGRVCVDLNYIVDMDNKEMVEHAIECLYEDLMQGIKYGNIINWIDVIEDKNAKEDMIPEFLLEKENE