Basic Information | |
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Taxon OID | 3300023174 Open in IMG/M |
Scaffold ID | Ga0214921_10021514 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6844 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001280 | Metagenome / Metatranscriptome | 732 | Y |
F006846 | Metagenome / Metatranscriptome | 363 | Y |
F008814 | Metagenome / Metatranscriptome | 327 | Y |
F016396 | Metagenome / Metatranscriptome | 247 | Y |
F026561 | Metagenome / Metatranscriptome | 197 | Y |
F045752 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214921_1002151415 | F008814 | N/A | MAERLTVLEEIIKEIGEELYQKWYNGLAIEDRTEETSKAMAVNAGETAFWVIQTFMNKFNAAADELKDN |
Ga0214921_1002151417 | F016396 | AGGA | MRKSERLRLLEMQVVRLEMMVELYTQSLTNLLESQGFQSPTQLDAGKWYKAKLDKLDNE |
Ga0214921_100215142 | F006846 | GAG | MLFNLVEKYLMRPKRLREAIQAVVRENDELLRRLAEYKEEGPTNLTWAEGDRWYGWTYNKEKKRYYFDDIGNESIMGLWEDQWLREADNDQLDMFENQVDFE |
Ga0214921_100215144 | F045752 | AGAAG | MADPTQTPSRGDWLCPCSGCSKSIAAERKQLIEILLLKKAEYLIYRGSSFDAEGNLMWAKDDALAYSEGIDMAVKLIEDRMPKPKVKK |
Ga0214921_100215145 | F026561 | N/A | MSNFTKDDGTGMTPPPAAGSASGAVTSREATRKNPRQGVRSGIKVDTNKHGIRRETSLDPKPPRKTRPKKV |
Ga0214921_100215146 | F001280 | GGA | MCIECGCEALGSSTGIVPVTVTDVSRDGESGLTLDMTSTPEQTRQFINE |
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