NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214921_10021514

Scaffold Ga0214921_10021514


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10021514 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6844
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F008814Metagenome / Metatranscriptome327Y
F016396Metagenome / Metatranscriptome247Y
F026561Metagenome / Metatranscriptome197Y
F045752Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002151415F008814N/AMAERLTVLEEIIKEIGEELYQKWYNGLAIEDRTEETSKAMAVNAGETAFWVIQTFMNKFNAAADELKDN
Ga0214921_1002151417F016396AGGAMRKSERLRLLEMQVVRLEMMVELYTQSLTNLLESQGFQSPTQLDAGKWYKAKLDKLDNE
Ga0214921_100215142F006846GAGMLFNLVEKYLMRPKRLREAIQAVVRENDELLRRLAEYKEEGPTNLTWAEGDRWYGWTYNKEKKRYYFDDIGNESIMGLWEDQWLREADNDQLDMFENQVDFE
Ga0214921_100215144F045752AGAAGMADPTQTPSRGDWLCPCSGCSKSIAAERKQLIEILLLKKAEYLIYRGSSFDAEGNLMWAKDDALAYSEGIDMAVKLIEDRMPKPKVKK
Ga0214921_100215145F026561N/AMSNFTKDDGTGMTPPPAAGSASGAVTSREATRKNPRQGVRSGIKVDTNKHGIRRETSLDPKPPRKTRPKKV
Ga0214921_100215146F001280GGAMCIECGCEALGSSTGIVPVTVTDVSRDGESGLTLDMTSTPEQTRQFINE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.