Scaffold Ga0214921_10020674

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10020674
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7036
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F007468	Metagenome / Metatranscriptome	350	Y
F013414	Metagenome / Metatranscriptome	271	Y
F021288	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1002067410	F000263	GAGG	MNAEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEEQLAWAVAVEKETEEAMDSMARTEAEGRLDTLVELYKLTYDLSFAIGEKEGQKV
Ga0214921_1002067411	F007468	N/A	MIFFKGFGQRDILIMLTKSSRFIEYMKLHLISLNQDFEDDYNVQSKINIQGQIIATEHLLSVATDIMNNNERIYV
Ga0214921_1002067412	F021288	GAGG	MLGYTQKDLADMTYGVWQADLLVNADENPAIHNYLMTTHDFLQGLWAEGYFDHAN
Ga0214921_1002067415	F001125	AGGCGG	MGDRANFGFKQSNDTTIFLYGHWAGHGMLERLANAVETARPRWTDESYATRICVSQIVGEDWKSETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCTKYSQLSM
Ga0214921_1002067417	F001043	GAG	MFQTTNQQGIQGDNVSDYKDGFDDGYKFAREEMMEKLSEIDINDIDSWILDRLCEMIEGGKL
Ga0214921_100206746	F013414	AGGCGG	MSKTREIKVAEDLVNLTEDHWFNAAILARYLTDQPFYTVDRIMELVAQIIRWQANRYNDELTTDTGIYNSGLTSEGLFLANELNETLNRLIKTYKWENIKLPIDPDKIIRRLPKAAEQSYRYSWLHEEKKDPILVNHPFI
Ga0214921_100206747	F000852	AGGA	MQTKREYLKQQGITVGVRGRFSGAAKVAIQEALSKGVTFSDPQPVTKKAK
Ga0214921_100206749	F001019	AGG	MTYEPSLEIVEVEYSCSPGGVDLFEVYDKSDIPLDMPIYETENLTEAVQFCYNLGKDFTVRTLAEWNERELAYVN