NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10020498

Scaffold Ga0214921_10020498


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10020498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7074
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F008296Metagenome335Y
F029029Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002049810F008296AGGVTEAWVQEYDLLVSTLAIEYSRKYSIVETADIRQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSIISDSYEIPSKIKDLNFKPDKSGQVTDGNNWLVLRADIEKAYNKLAEAKQNILRLRFSVENCEWTELGKELNTSADGARMRVSRAINSLIRILGGWRTYVDTDNLEVKEEEDDTRA
Ga0214921_1002049811F029029N/AMTQEPKEIKDLFKKDYSKAMDLRGHPIGDICVCGSELFTAIVAFEYGEICFYFLDGECVDCGSLVTLPTPIDDQGMDCD
Ga0214921_1002049815F001094AGGMNTTKLKAIVSTYARAAVAAVLALYLTGTTDLKSLALAGIAAVAGPILKAIDPSASEFGIGSK

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