Scaffold Ga0214921_10019600

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10019600
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7305
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029440	Metagenome	188	N
F054036	Metagenome	140	Y
F078721	Metagenome	116	N
F084222	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001960010	F084222	AGGA	MSKELYLNRLALEIEKHEERGNVRKAQELHNYFLKIASMRDIDPEAFADDYTEEQELMPKLNEEYYGELKDNPDEEIVDDSLASDLYDHDVNEFKKDTSSNAMNLINSLRRELQHNDLALKILDILEEELH
Ga0214921_1001960012	F054036	AGAAGG	MKVNFRVTGSLNIPDDAVFHKDVVGQLYAVEFNNKMHMLQVCLVTESPDGEFETLHQYDEMQANDILELMYDEAEFIED
Ga0214921_100196005	F078721	GAGG	MIVDVSGINKLMDIWGEDCVCFFNETETTLIQLRNYFEDKHLNFPIEEIKYPYSEIEFNNNILLIVNNKKNRDDLKISSRENIDLDV
Ga0214921_100196006	F029440	GGAG	MYDLAVKNNKFLHIAPRDLKKKHIDPKLRDICDRINATDYCWTVFSCQGHFSGSQKTSLPYLVLLCANEKRPHILNQLYSAFEDDAEYDLNFPLLGPRSHMILVSLGLKDENFTYISIHFHVKGKKDQDYCLKVMDIFSRTL