Scaffold Ga0214921

Basic Information
Taxon OID	3300023174 Open in IMG/M
Scaffold ID	Ga0214921_10019239 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023174 Open in IMG/M

Scaffold ID

Ga0214921_10019239 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7410
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (69.23%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7410

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (69.23%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F047479	Metagenome / Metatranscriptome	149	N
F080837	Metagenome / Metatranscriptome	114	N
F088194	Metagenome / Metatranscriptome	109	Y
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001923912	F102437	AGGAG	MISKLRAFEDTVLSVREPRELKGSLVCSIQDSDIPIIDKRKLIIAIDRCNTINDLQRLFYNALLKFEGHGVL
Ga0214921_1001923913	F026209	N/A	MGMMNKEITYEMYDDNAGEWRNVTEPAIGGIKWAKRESTGDYKQSAYYDHSFYKVPFYGPYDQGRIHRALNRLYPARFNKFGGYSTVSAVEKLDDQHIKVEMCYHIGD
Ga0214921_1001923915	F080837	N/A	MMKTKAKQKHEFFPKMMTTQVLRPYLKEAKRVGYTVSGSVKDGFIAVVTDACEQHPAGEVVMRGVKKPGVNVWIMGFNTLYWQEPTIAECLAESKWYAEMQGASK
Ga0214921_1001923923	F047479	AGGAG	MKNKYLHIDLYNGKSKWISESIFMNYTVGTNYDGKDSKGYFMTYKLEDGTVEKEYYNWKDNWESIKRTETHTVYKGEECMLIDFSNKNLRGSK
Ga0214921_100192394	F014710	N/A	MMTTMTTDYKTIPTQFKKKGFTYTQLKRDGKRAIFQQTRPGSAVNNYEVVKIGRHNGYVMGGMSIEPAETYPGSSLWGITAWTCSSMDAAMQRYDALSS
Ga0214921_100192397	F036073	AGGAG	MNETETTKPYDADLHCKKIAWMVANGPDWDIENQTLEQYLETSPDYPTDEQVAGFNHLWVEPFVPFKKNKPYEGEPVDEQV
Ga0214921_100192399	F088194	AGTAG	MNEVAATSEETTAYALGSTIGTLLNLKRMVEQNMTDYSNNLEGMRGMIPMWSKSELMDQFDRAISKLNTITYPYKY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214921_10019239

Overview

Ecosystem & Geography

Associated Families

Sequences