NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10019032

Scaffold Ga0214921_10019032


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10019032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7467
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030987Metagenome / Metatranscriptome183N
F031363Metagenome182Y
F035185Metagenome172N
F041021Metagenome / Metatranscriptome160N
F045580Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001903211F045580N/AMNKMNILLVLLIAVIIIGPIATIWALNTLFPVLAIPLTLDTWCAAVILGGIFRGDGISFKGK
Ga0214921_1001903213F041021GGAMPKFIVETLQTFQEVHVIEAENEEQAKKISEQSDYNASIYLGQTNVDVQKFSESKLKRWKEREPYFFDGYTVVEDGSLVYRKPDGSLNGNMPKIEINL
Ga0214921_100190323F030987AGGAMILRIIAHLPLNLIGQCNMKMQTAIKQIQKEADFQGLTFVEVLEDIQKYGKMLYSEKTMDAYQTVISNGQFFNESPIDIALYNKDMMEME
Ga0214921_100190327F035185AGAAGGMSFDFDDDGEFSVNYEKVLYSEEFLPVTRLLAADLIKTQYMPIGDFLKKLSNDTLAELTEISENENDPHFEEMILITEMLAAAEGTNIGGTPEVHQRLNLFITWLVVESLRRKGLVRVFYENISFGEDMIDKIIVEKIK
Ga0214921_100190329F031363AGGAGVKPSEYDGFYFLPNDEDGLTFHYFDFEGELANGKKYESKNEIGDLWQIAFFTKNEEGYPVYNDSFEAIFGNPEMYVKNLCGAGLYGCIVRKTDKSVKWFEQYLNKVKNRVTIMILKTD
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