Scaffold Ga0214921_10018033

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10018033
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7772
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F006841	Metagenome / Metatranscriptome	363	Y
F025979	Metagenome / Metatranscriptome	199	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_100180331	F025979	N/A	KEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYA
Ga0214921_100180332	F058150	N/A	MEILVNSSSPITHKVFWRGQLTDADALPAVKVFDITEDPAVTPPINPGVALATLTPVKSEVDYGTYTVYIPFDYTNRQRQLRLNWVYNVNGETMYKDHKVFVQTPYTDMSQAVDSLGLGSDYSDPNSKSYLELCNAERYARKLIEAYTGQQFYLYDDVQIVYGSGSDVLPLPYKISELHELYQNDILLLDNLNGVDNWNYTTVISESGFGLRINRATMLDNTIYVANGMVPPTINDTYGGAFYNGATYRVQGTFGWDEIPDEVDIACVELMKDYFSKDKVWRNKYMKSIQTFDWQFEYNSGTYSGTGNLYVDQLLLPYVINKMVVI
Ga0214921_100180333	F056615	N/A	MYDLVDSVMPMFMDVYRQFDLQDPNTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIMSNKYINDQILQVRTSEKINLREKLTNIRDSEGNVIWEEINFPSNTPTVFELMGTTPMTDPLGGVVGYNSTVKRSENQTIGQ
Ga0214921_100180335	F000258	GGAGG	MTVDYKADMMLDLRKFLWSQLILNKIFTATDYYSDNIGQEIIPIIPVQQAPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQVLFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFIADISPTSPSEELQGFLSADVVLEVKYARFLDSVGRFL
Ga0214921_100180337	F006841	AGGAGG	LATTIYSVEEIKLQNGSTVQLKPLSIKELRKFMAVIQKTASATDQAESLDVLIEACGVALEKQLPDLVKDKDAFEDALDIPTINRILEVCGGIKMDDESANLTQAAVLAGMN