Scaffold Ga0214921_10017740

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10017740
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7870
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F020690	Metagenome / Metatranscriptome	222	N
F022415	Metagenome / Metatranscriptome	214	Y
F048314	Metagenome / Metatranscriptome	148	Y
F074411	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001774010	F015732	AGGA	MTKVTNLETAVSIVRTSTDKATALADIMNILGVSRSNAFVYHTKASKILFSANNVDEIMGKVSPQYKKVSESVQGTSGTKKAQKLAEIDAFLANAPTAKGNPFASLGA
Ga0214921_1001774012	F048314	AGG	MIDSIEQAAAMLSLGYTEHEIIRIMHIPPSMAEDLIQKAEQWNDQEFVPYTEEEVDDMARYFEE
Ga0214921_1001774022	F020690	GAGG	MINEIKSTDKLVSKGIYMSASAIYTHTKSAKIIALMIKRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYMVESKTAVIDCRLGWAKALEVIAHELVHAEQYHIGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCSILEEKYP
Ga0214921_100177406	F074411	GGA	MQTTIKLTEKQVALLLQILDEQISVGNIEASDKALADEVLEILETAENKITSLY
Ga0214921_100177408	F022415	AGGAG	MSKMSNLHMIITDAIACDLNEDFIIDLMVEEGLPREACPEILRVFKQVEAVE