NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10017305

Scaffold Ga0214921_10017305


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10017305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8013
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (44.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F039139Metagenome164N
F040618Metagenome161N
F053301Metagenome / Metatranscriptome141N
F093847Metagenome106N
F095470Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100173051F040618N/AMENTTTVRMSMTVNVKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFAPEENYFDGVGSFGNEIWHLNPDNGEMCGKTYLYSTMTDILCVPYSFSQPTKEKSPTFLFEIS
Ga0214921_1001730510F093847AGAAGMVFISQNLKDSTLTINLRKTFARIVYFIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSELKDNEATVSSLDIIGTVYIGGTYVTINNKDVISL
Ga0214921_1001730511F039139N/AMSMFLNVFEFTSEDIVNILRAHDTDITIHQLAELHNILDHDSIVRSALQYNDPEMQLKSALSHAEDLMIMDGLYITEPKRFYVDD
Ga0214921_1001730522F053301GGAGGMTVREVIELLESIAQKEGDQTECIVEIEEQDYNTEAEIHTVCTNGYEDGTKKIALVGTKDEE
Ga0214921_100173054F095470GGAMKTVIWNNNEIWNQSHHYEPLIEDITGFDLRRSLCSESIKYMAKRLSDTKYSRVFKTKYSIYENEYKALVEKFKQEADNNGKIEVKFEKV
Ga0214921_100173057F001561GAGGMQTPEQKLKLLNKTIETLWHGVSDTKEGDYPKIVNLYKEVLKLNPKDRDAWENMVWLMWSLAINKKDTAWLFEAEKFAKMYLSINPNGYRAFEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYVKNGDKVRAIGNCRFNLRRYPNDSYAKSKLKELTK
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