Scaffold Ga0214921_10016909

Overview

Basic Information

• Taxon OID: 3300023174
• Scaffold ID: Ga0214921_10016909
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8166
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F019102	Metagenome	231	Y
F019290	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214921_1001690915	F005584	N/A	MSGTIDTTYFSTDLTYMIGDLWASVTGLGSSAVSASITDLGTAQELDIGGDVIRITQSLVVKASAISAPAIGQLCSVSGVERMIAGFSKAADDVSYTIELADITT
Ga0214921_100169097	F019102	N/A	MSISLEEELNSTFVSPEREFMGEKLAPYTEGSRLLLLQVRDDEDSSIYFIWAFIYMHIELAKDRKEAIKLAWNKNLFREKLFLWADNKTQSDRDIATNLVSSIIEEASKGQIEVLPTPGAVQQSGNG
Ga0214921_100169098	F019290	N/A	MMEAFWGTTNIKVASAVAAFGGKLRTTDPVTTQVFEDGRRQTTFWFQANGSGGNARDEMERPWAEMKSDDESPIRYVRAALENRETLLGLVKRAEPIRVIQRGNQTLLIPENAKPELKKAILKHL
Ga0214921_100169099	F006138	AGGAG	MPAVTIGTQGLVWGCTAEVIGLVQSFSEARNISKSEITNNFGEIVGVAYYNPTTAYSLSVAVTGAISVTAGGALGALANAATLGVTRIDSLTINKSPDAFVTLDISATGYPNVT